专家文章 | 苏晓泉

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热心肠智库专家文章 | 苏晓泉

2022

CAComprehensive understanding to the public health risk of environmental microbes via a microbiome-based index

JGG, 10.1016/j.jgg.2021.12.011

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2021

FACAElucidating the Beta-Diversity of the Microbiome: from Global Alignment to Local Alignment

mSystems, 10.1128/mSystems.00363-21

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CAA Scale-Free, Fully Connected Global Transition Network Underlies Known Microbiome Diversity

mSystems, 10.1128/mSystems.00394-21

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enables comprehensive and rapid comparison of microbiome functional profiles on a large scale using hierarchical dissimilarity metrics and parallel computing

10.1093/bioadv/vbab003

CAMicrobiome Search Engine 2: a Platform for Taxonomic and Functional Search of Global Microbiomes on the Whole-Microbiome Level

mSystems, 10.1128/mSystems.00943-20

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CAMeta-Apo improves accuracy of 16S-amplicon-based prediction of microbiome function

BMC Genomics, 10.1186/s12864-020-07307-1

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2020

FACAMethod development for cross-study microbiome data mining: Challenges and opportunities

COMPUT STRUCT BIOTEC, 10.1016/j.csbj.2020.07.020

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FAMultiple-Disease Detection and Classification across Cohorts via Microbiome Search

mSystems, 10.1128/mSystems.00150-20

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2019

CADynamic Meta-Storms enables comprehensive taxonomic and phylogenetic comparison of shotgun metagenomes at the species level

Bioinformatics, 10.1093/bioinformatics/btz910

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2018

FAIdentifying and Predicting Novelty in Microbiome Studies

mBio, 10.1128/mBio.02099-18

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2017

CAParallel-META 3: Comprehensive taxonomical and functional analysis platform for efficient comparison of microbial communities

Sci Rep, 10.1038/srep40371

2014

FAAssessment of quality control approaches for metagenomic data analysis

Sci Rep, 10.1038/srep06957

FARapid comparison and correlation analysis among massive number of microbial community samples based on MDV data model

Sci Rep, 10.1038/srep06393

FABiological ingredient analysis of traditional Chinese medicine preparation based on high-throughput sequencing: the story for Liuwei Dihuang Wan

Sci Rep, 10.1038/srep05147

FAParallel-META 2.0: enhanced metagenomic data analysis with functional annotation, high performance computing and advanced visualization

PLoS 1, 10.1371/journal.pone.0089323

FA[Meta-Mesh: metagenomic data analysis system]

Sheng wu gong cheng xue bao

2013

FAGPU-Meta-Storms: computing the structure similarities among massive amount of microbial community samples using GPU

Bioinformatics, 10.1093/bioinformatics/btt736

2012

FAMeta-Storms: efficient search for similar microbial communities based on a novel indexing scheme and similarity score for metagenomic data

Bioinformatics, 10.1093/bioinformatics/bts470

FAParallel-META: efficient metagenomic data analysis based on high-performance computation

BMC SYST BIOL, 10.1186/1752-0509-6-S1-S16