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热心肠智库专家文章 | 方晓东

2023

CASingle-cell and spatiotemporal transcriptomic analyses reveal the effects of microorganisms on immunity and metabolism in the mouse liver

COMPUT STRUCT BIOTEC, 10.1016/j.csbj.2023.06.020

CAMicrobiota-mediated shaping of mouse spleen structure and immune function characterized by scRNA-seq and Stereo-seq

JGG, 10.1016/j.jgg.2023.04.012

CAAssembly and analytical validation of a metagenomic reference catalog of human gut microbiota based on co-barcoding sequencing

FMICB, 10.3389/fmicb.2023.1145315

CANGenomeSyn: an easy-to-use and flexible tool for publication-ready visualization of syntenic relationships across multiple genomes

Bioinformatics, 10.1093/bioinformatics/btad121

2022

CAAssociation of the characteristics of the blood metabolome and gut microbiome with the outcome of methotrexate therapy in psoriasis

Front Immunol, 10.3389/fimmu.2022.937539

CAComparative genome anatomy reveals evolutionary insights into a unique amphitriploid fish

Nat Ecol Evol, 10.1038/s41559-022-01813-z

2021

CAAltered metabolome and microbiome features provide clues in understanding irritable bowel syndrome and depression comorbidity

ISME J, 10.1038/s41396-021-01123-5

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CAComprehensive Study of Germline Mutations and Double-Hit Events in Esophageal Squamous Cell Cancer

FRONT ONCOL, 10.3389/fonc.2021.637431

2018

CABioinformatics applications on Apache Spark

GigaScience, 10.1093/gigascience/giy098

CAThe landscape of somatic mutation in sporadic Chinese colorectal cancer

Oncotarget, 10.18632/oncotarget.25287

CAPopulation genomics of finless porpoises reveal an incipient cetacean species adapted to freshwater

Nat Commun, 10.1038/s41467-018-03722-x

2017

CAA reference gene set construction using RNA-seq of multiple tissues of Chinese giant salamander, Andrias davidianus

GigaScience, 10.1093/gigascience/gix006

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FAGenome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory

Nat Ecol Evol, 10.1038/s41559-016-0059

2015

FAAdaptation and possible ancient interspecies introgression in pigs identified by whole-genome sequencing

Nat Genet, 10.1038/ng.3199

2014

FAGenome-wide adaptive complexes to underground stresses in blind mole rats Spalax

Nat Commun, 10.1038/ncomms4966

FASpider genomes provide insight into composition and evolution of venom and silk

Nat Commun, 10.1038/ncomms4765

FAGenome and transcriptome analysis of the fungal pathogen Fusarium oxysporum f. sp. cubense causing banana vascular wilt disease

PLoS 1, 10.1371/journal.pone.0095543

2013

FAAdaptations to a subterranean environment and longevity revealed by the analysis of mole rat genomes

Cell Rep, 10.1016/j.celrep.2014.07.030

2012

FAThe sequence and analysis of a Chinese pig genome

GigaScience, 10.1186/2047-217X-1-16